Resource

Id summary/zemke2023Conserved/atac_fragments/M1_Dheni_neun_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 6 y
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Q21.26.019/A17112
  • modalities: ATAC
  • neun_enriched: yes
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sample_id: M1_Dheni_neun
  • sequencing_platform: Illumina
  • sex: M
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTAAAGCTCGGTTCCT-1, TTTGACCGTAGGTTGC-1, AGTAACCTCATCAGTA-1, GCTCTGGCATGCATAT-1, AGGAAACGTACCGAAC-1 (top 5 of 624117 values)
count int

count
HISTOGRAM FOR count [1, 19]

Fragments

Chromosome Fragments
all chromosomes 386473377
chr1 35153746
chr2 24602499
chr3 24575562
chr4 20468286
chr5 18107527
chr6 22045836
chr7 24979845
chr8 18132011
chr9 18038254
chr10 18979929
chr11 19513199
chr12 15484878
chr13 15298004
chr14 20317714
chr15 16360932
chr16 17369843
chr17 10174306
chr18 8766502
chr19 14934280
chr20 14803060
chrX 7953771
chrY 413393

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIG8HFGF8.tsv.gz 3.97 GB 82fa64226a95fc990d5a5e552f9fcf53
4DNFIG8HFGF8.tsv.gz.tbi 1.44 MB 7eb8786d86f7d767b88a8363763cae3a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB ad260b27872a7bf53e42594f8cc3e6b6
statistics/