Resource

Id summary/zemke2023Conserved/atac_fragments/M1_R2_deep2content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 6 y
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: NA
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sample_id: M1_R2
  • sequencing_platform: Illumina
  • sex: M
  • species: macaque
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCAACATAGGCCCAGT-1, AGGGTTGCAATACTGT-1, GCTAGCTCAGCAAGGC-1, AAGCGGGTCCTAAGGT-1, CATTATGAGGAAGCAC-1 (top 5 of 637294 values)
count int

count
HISTOGRAM FOR count [1, 13]

Fragments

Chromosome Fragments
all chromosomes 203848508
chr1 18829921
chr2 12869045
chr3 12864094
chr4 10928610
chr5 9286246
chr6 11142736
chr7 13193584
chr8 9237237
chr9 9550291
chr10 9939954
chr11 9936905
chr12 8078908
chr13 7805899
chr14 10863992
chr15 8759710
chr16 9490846
chr17 5246881
chr18 4441323
chr19 8677622
chr20 8283498
chrX 4226767
chrY 194439

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIZ7QE5R7.tsv.gz 2.1 GB eb5c22742e5cf8a7a0f8a86bc15ebf86
4DNFIZ7QE5R7.tsv.gz.tbi 1.03 MB d515a70a0c8d0fbaaadc65495eb789ad
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB c767ed3df8b376ccaac758ca97a8ece5
statistics/