Resource

Id summary/zemke2023Conserved/atac_fragments/M1_donor1_deep2content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 42 y
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: H19.30.001
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor1
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTAATCCGTTTACCGT-1, GGCGGTTTCAATTACG-1, TCAGGTCCACCCACCT-1, AGCTTTAAGCTATATG-1, TATGGTCAGACAACAG-1 (top 5 of 628354 values)
count int

count
HISTOGRAM FOR count [1, 66]

Fragments

Chromosome Fragments
all chromosomes 236729311
chr1 21620458
chr2 18299181
chr3 15074936
chr4 11910895
chr5 13046430
chr6 12775299
chr7 12602345
chr8 10709884
chr9 10516571
chr10 11078792
chr11 12615382
chr12 11342510
chr13 6297451
chr14 7784156
chr15 7337951
chr16 8587332
chr17 10552341
chr18 5419567
chr19 9615314
chr20 6208738
chr21 2897423
chr22 4850485
chrX 5067608
chrY 407555
GL000009.2 6218
GL000194.1 15038
GL000195.1 18478
GL000205.2 18504
GL000213.1 23
GL000218.1 5564
GL000219.1 23290
KI270711.1 1929
KI270713.1 12266
KI270721.1 348
KI270726.1 43
KI270727.1 2418
KI270728.1 4135
KI270731.1 688
KI270734.1 1765

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIVFTCGEV.tsv.gz 2.46 GB 2448395f3883a48298b21dffb6b3c91a
4DNFIVFTCGEV.tsv.gz.tbi 1.15 MB 1b9cecf7c2e9301b97b6b693ad0b6d57
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.41 KB 6fa029f96c7317b49cd68271620737da
statistics/