Resource

Id summary/zemke2023Conserved/atac_fragments/M1_donor1_neun_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 42 y
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: H19.30.001
  • modalities: ATAC
  • neun_enriched: yes
  • processing_level: aligned
  • reference_genome: reference/Human/genome/GRCh38.p13
  • resolution: single_nucleus
  • sample_id: M1_donor1_neun
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGAACCGGTCGTAAAT-1, TCGATTAAGTCAATTG-1, TTTGTGTTCTATTGTC-1, TATGAAGCACCTCAGG-1, GTCATCACAAGGTATA-1 (top 5 of 657636 values)
count int

count
HISTOGRAM FOR count [1, 37]

Fragments

Chromosome Fragments
all chromosomes 610930828
chr1 54185483
chr2 48324874
chr3 40893782
chr4 32067363
chr5 35086935
chr6 33547815
chr7 33218587
chr8 29603466
chr9 26215508
chr10 28347446
chr11 32476002
chr12 30668063
chr13 16856518
chr14 19460199
chr15 18647434
chr16 20961173
chr17 24860698
chr18 14656367
chr19 21160828
chr20 15823865
chr21 7045416
chr22 11999784
chrX 13492036
chrY 1103349
GL000009.2 13353
GL000194.1 30437
GL000195.1 34147
GL000205.2 36833
GL000213.1 53
GL000218.1 12426
GL000219.1 53293
KI270711.1 3592
KI270713.1 19883
KI270721.1 676
KI270726.1 96
KI270727.1 6338
KI270728.1 8891
KI270731.1 2092
KI270734.1 5727

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIDT7LAT9.tsv.gz 6.2 GB 9e5419c51d4ee071bad009e609532142
4DNFIDT7LAT9.tsv.gz.tbi 1.86 MB b0186f57ac44ee5fcfcb52338ebb930b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.42 KB c2c6068358afba17535ca7e43a788dda
statistics/