Resource

Id summary/zemke2023Conserved/atac_fragments/M1_donor2_deep2content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 29 y
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: H19.30.002/UW7060
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor2
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AGGCCCAGTTCGCTTG-1, ACCATAATCATGCTTT-1, GGCCTTAAGTTCCCAC-1, GTACGTAGTCCGGTTC-1, GCTTAAATCTTGCAGG-1 (top 5 of 656535 values)
count int

count
HISTOGRAM FOR count [1, 68]

Fragments

Chromosome Fragments
all chromosomes 326953382
chr1 29391148
chr2 25708040
chr3 21353994
chr4 17123794
chr5 18230671
chr6 17969345
chr7 17419205
chr8 14845174
chr9 14029056
chr10 15088871
chr11 17485517
chr12 15872389
chr13 9109283
chr14 10833547
chr15 9933988
chr16 11474882
chr17 14031844
chr18 7571003
chr19 12949269
chr20 8277648
chr21 4036736
chr22 6393017
chrX 7147602
chrY 586352
GL000009.2 7144
GL000194.1 7918
GL000195.1 18121
GL000205.2 25659
GL000213.1 368
GL000218.1 6585
GL000219.1 7682
KI270711.1 1517
KI270713.1 8085
KI270721.1 1082
KI270726.1 88
KI270727.1 1618
KI270728.1 1764
KI270731.1 813
KI270734.1 2563

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIGITJUE1.tsv.gz 3.34 GB 2055398c10a0d23c2e8a0c5b43eecd8e
4DNFIGITJUE1.tsv.gz.tbi 1.38 MB 5883b4d3f7c4516dc1b05a75100c7ce9
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.42 KB f943c5525306742e86843d5fc4e7669e
statistics/