Resource

Id summary/zemke2023Conserved/atac_fragments/M1_donor3_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 58 y
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: H19.30.004
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor3
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAAACACTCCCTCATA-1, GCTAACCCAGATTCAT-1, CTGCAATAGCGAGCGA-1, GTAGTTTCATGACTAT-1, CGCTAATAGCGGTTAT-1 (top 5 of 659462 values)
count int

count
HISTOGRAM FOR count [1, 107]

Fragments

Chromosome Fragments
all chromosomes 352052138
chr1 32825069
chr2 26879777
chr3 21768993
chr4 16643072
chr5 18524527
chr6 18504519
chr7 17906228
chr8 15098565
chr9 15821716
chr10 16726495
chr11 19192509
chr12 16296376
chr13 9114396
chr14 11766435
chr15 11036117
chr16 13410614
chr17 16785886
chr18 7801363
chr19 15158450
chr20 9851035
chr21 4371412
chr22 7920054
chrX 7938025
chrY 576464
GL000009.2 4021
GL000194.1 24484
GL000195.1 28475
GL000205.2 24251
GL000213.1 233
GL000218.1 8990
GL000219.1 15668
KI270711.1 4466
KI270713.1 16581
KI270721.1 402
KI270726.1 47
KI270727.1 2687
KI270728.1 786
KI270731.1 550
KI270734.1 2400

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIJEPBYJC.tsv.gz 3.46 GB a8f5c4dd71bbfee912f212f7152a09c5
4DNFIJEPBYJC.tsv.gz.tbi 1.38 MB 3d23233a0051d8c4511556d11f820c09
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.41 KB 604e86dcee1a8d7fd8b0ba5653ea3c6a
statistics/