Resource

Id summary/zemke2023Conserved/atac_fragments/M1_donor3_neun_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 58 y
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: H19.30.004
  • modalities: ATAC
  • neun_enriched: yes
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor3_neun
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTAAAGGCATTAGGCC-1, CCTGATGAGGAAGCAC-1, CCTGATGAGTGACCTG-1, GTGCTCCGTGACATAT-1, AATGCATGTCCGTGAG-1 (top 5 of 494625 values)
count int

count
HISTOGRAM FOR count [1, 88]

Fragments

Chromosome Fragments
all chromosomes 103296057
chr1 9211149
chr2 8085452
chr3 6722043
chr4 4988386
chr5 5732714
chr6 5471343
chr7 5649148
chr8 4882408
chr9 4550253
chr10 4894954
chr11 5479029
chr12 5098770
chr13 2773608
chr14 3403138
chr15 3244383
chr16 3770892
chr17 4497167
chr18 2433516
chr19 3619775
chr20 2913998
chr21 1201361
chr22 2290574
chrX 2177998
chrY 170925
GL000009.2 1496
GL000194.1 6243
GL000195.1 5862
GL000205.2 6750
GL000213.1 96
GL000218.1 2614
GL000219.1 3669
KI270711.1 840
KI270713.1 2862
KI270721.1 190
KI270726.1 24
KI270727.1 550
KI270728.1 375
KI270731.1 444
KI270734.1 1058

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIJGIBRZB.tsv.gz 1.09 GB e460d3cc7c201ad3ef287e2ad0412a3e
4DNFIJGIBRZB.tsv.gz.tbi 816.35 KB d8b08913adc5cb33290556c29631d1e7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.42 KB 0828b95f6df0bb467416770ef61a3d56
statistics/