Resource

Id summary/zemke2023Conserved/atac_fragments/M1_meadow_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 6y6m
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Meadow
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sample_id: M1_Meadow
  • sequencing_platform: Illumina
  • sex: F
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTGTCCGGTACCGAAC-1, TTGCATTTCCCATAGG-1, GGTATTGGTCACAGCG-1, ATCCGTGAGGCATTAC-1, TGCAGGCTCATCAGTA-1 (top 5 of 668057 values)
count int

count
HISTOGRAM FOR count [1, 16]

Fragments

Chromosome Fragments
all chromosomes 720858709
chr1 57718250
chr2 49180186
chr3 36552368
chr4 39929132
chr5 55573534
chr6 37976293
chr7 45695746
chr8 28968901
chr9 35698256
chr10 37344162
chr11 37518754
chr12 36459331
chr13 28065812
chr14 27669218
chr15 27283289
chr16 22930377
chr17 16920961
chr18 13762841
chr19 14998642
chr20 13520831
chr21 10938174
chr22 25182541
chrX 20778548
chrY 192562

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFI4ZGED2O.tsv.gz 7.08 GB a705dca32adcf512476f5234f2b3eb4d
4DNFI4ZGED2O.tsv.gz.tbi 1.98 MB add733f8da618a46a8a6ab7df31a758f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.42 KB 2c934e676c46fda9651070d659bd373a
statistics/