Resource

Id summary/zemke2023Conserved/atac_fragments/M1_peregrine_A_deep2content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 5y7m
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Peregrine
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sample_id: M1_Peregrine_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTTGTTGCACCTGGTG-1, CTAACCCTCATTACGA-1, TTAAGTGTCCCTGTTA-1, CTCATTTAGCCACATG-1, ACCTTGCTCAAGTGTC-1 (top 5 of 686283 values)
count int

count
HISTOGRAM FOR count [1, 23]

Fragments

Chromosome Fragments
all chromosomes 622799843
chr1 50615926
chr2 41663531
chr3 30072707
chr4 33960800
chr5 50590271
chr6 33039565
chr7 40322904
chr8 24746190
chr9 30886194
chr10 32670203
chr11 32843740
chr12 32877981
chr13 23821508
chr14 24078752
chr15 24329565
chr16 18880421
chr17 13901947
chr18 11812651
chr19 13252061
chr20 12017715
chr21 9214663
chr22 24435955
chrX 12341008
chrY 423585

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIGCQMGCH.tsv.gz 6.17 GB 1ce8c187e0416753d104f1ab73bd235f
4DNFIGCQMGCH.tsv.gz.tbi 1.82 MB 67108e78d5e2b85429d0ebfa8a68f433
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 2a85b42f1948bbebfc7ae5a5738acf53
statistics/