Resource

Id summary/zemke2023Conserved/atac_fragments/M1_peregrine_B_deep2content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 5y7m
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Peregrine
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sample_id: M1_Peregrine_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAGGACACACAGAACG-1, GCAAACAAGGAAGCTA-1, AAAGGAGCAGGCAAGC-1, TATGGATGTTCGCGCT-1, TGAGAACCAATGCGCT-1 (top 5 of 685660 values)
count int

count
HISTOGRAM FOR count [1, 35]

Fragments

Chromosome Fragments
all chromosomes 571306306
chr1 46533587
chr2 38355194
chr3 27741847
chr4 31260654
chr5 46246727
chr6 30288108
chr7 36986183
chr8 22696149
chr9 28232720
chr10 29828357
chr11 30086318
chr12 30190241
chr13 21958118
chr14 22053097
chr15 22245074
chr16 17472731
chr17 12848644
chr18 10785820
chr19 12108987
chr20 11009118
chr21 8439893
chr22 22257879
chrX 11295690
chrY 385170

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIW8T2VJB.tsv.gz 5.7 GB 6fd4932044961e4286aa36c0ca828f92
4DNFIW8T2VJB.tsv.gz.tbi 1.73 MB 14df0b5501ccc2bb5caae185a92bde17
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.43 KB 6cceecce563dfe6f29b087aa30ac73a6
statistics/