Resource

Id summary/zemke2023Conserved/atac_fragments/M1_webster_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: 4y0m
  • assay: 10x_Multiome
  • brain_region: m1
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Webster
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sample_id: M1_Webster
  • sequencing_platform: Illumina
  • sex: M
  • species: marmoset
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCCAGCAAGACTTACA-1, TTCCCGCCAAGTTATC-1, GGTCTTTGTACCTTAC-1, GAGCTAGCAAAGCTAA-1, CATCGCTTCGTCAAGT-1 (top 5 of 668372 values)
count int

count
HISTOGRAM FOR count [1, 22]

Fragments

Chromosome Fragments
all chromosomes 789840610
chr1 64097259
chr2 54865315
chr3 42212101
chr4 44422587
chr5 58634561
chr6 42863539
chr7 49459378
chr8 33520863
chr9 39138356
chr10 41338132
chr11 40645702
chr12 39313734
chr13 32221678
chr14 31077863
chr15 29054570
chr16 25331407
chr17 19243006
chr18 14877594
chr19 16247095
chr20 14991258
chr21 12425176
chr22 25846339
chrX 17411107
chrY 601990

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFIR896BY7.tsv.gz 7.68 GB 5e36decbd6633fbdf2ed04c651b8e80e
4DNFIR896BY7.tsv.gz.tbi 2.07 MB 2dbfce16ec0c50cd9a52ac5d17b527d2
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.42 KB 589673097a2be447a1b796fd0be0203b
statistics/