Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_Dhenicontent_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 6 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Q21.26.019/A17112
  • gene_models: reference/Macaque/gene_models/Mmul_10_NCBI_RefSeq
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sample_id: M1_Dheni
  • sequencing_platform: Illumina
  • sex: M
  • species: macaque
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 12348 × 186365 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_Dheni/M1_Dheni.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 186365 186365 SHOX 1 NaN NaN NaN NaN NaN NaN NaN
feature_types 186365 2 Peaks 157605 NaN NaN NaN NaN NaN NaN NaN
chrom 186365 22 chr1 17333 NaN NaN NaN NaN NaN NaN NaN
start 186365.0 NaN NaN NaN 74011826.197263 52710253.813471 374.0 29327588.0 65812667.0 111779144.0 223609305.0
end 186365.0 NaN NaN NaN 74013973.115665 52710298.72323 375.0 29329447.0 65813806.0 111781586.0 223609306.0

Files

Filename Size md5
M1_Dheni.h5ad 1.1 GB 8152fe999d9b60a9f940f4bdb3f29ddf
M1_Dheni_barcodes.tsv.gz 59.31 KB f4d4978a082ecd5f6a07d4b2edcd591e
M1_Dheni_features.tsv.gz 3.4 MB dca3c9af3c21e1b1f0b85d47b600acf0
M1_Dheni_matrix.mtx.gz 498.48 MB b34b6e9b7b0b0038516e877b8e53f414
genomic_resource.yaml 1.02 KB 8b97a5aca6a701cb798a6b39cdcf1fa4
statistics/