Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_Dheni_neuncontent_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 6 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Q21.26.019/A17112
  • gene_models: reference/Macaque/gene_models/Mmul_10_NCBI_RefSeq
  • modalities: RNA, ATAC
  • neun_enriched: yes
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sample_id: M1_Dheni_neun
  • sequencing_platform: Illumina
  • sex: M
  • species: macaque
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 11952 × 188331 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_Dheni_neun/M1_Dheni_neun.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 188331 188331 SHOX 1 NaN NaN NaN NaN NaN NaN NaN
feature_types 188331 2 Peaks 159571 NaN NaN NaN NaN NaN NaN NaN
chrom 188331 22 chr1 17293 NaN NaN NaN NaN NaN NaN NaN
start 188331.0 NaN NaN NaN 74239757.560895 52187596.801691 374.0 30099102.5 66559155.0 111512120.0 223609305.0
end 188331.0 NaN NaN NaN 74241892.607064 52187636.181788 375.0 30102110.5 66560364.0 111514000.0 223609306.0

Files

Filename Size md5
M1_Dheni_neun.h5ad 1.1 GB d536a1f703978c1bf6a56288cd7f172a
M1_Dheni_neun_barcodes.tsv.gz 57.68 KB 4454f8fcd52dca99fd48ea357f4b6052
M1_Dheni_neun_features.tsv.gz 3.44 MB 956852a3cf479cdeeac29da8d6bd7aa7
M1_Dheni_neun_matrix.mtx.gz 493.46 MB 1d2afc645906efcb308fa844de983782
genomic_resource.yaml 1.04 KB 507d2d6e15498748578af211e5024bc5
statistics/