Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_Meadowcontent_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 6y6m
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Meadow
  • gene_models: reference/Marmoset/gene_models/calJac240_pri_NCBI_RefSeq
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sample_id: M1_Meadow
  • sequencing_platform: Illumina
  • sex: F
  • species: marmoset
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 10994 × 170044 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_Meadow/M1_Meadow.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 170044 170044 ND1 1 NaN NaN NaN NaN NaN NaN NaN
feature_types 170044 2 Peaks 147998 NaN NaN NaN NaN NaN NaN NaN
chrom 170031 24 chr1 13293 NaN NaN NaN NaN NaN NaN NaN
start 170044.0 NaN NaN NaN 71533646.819388 51651994.094074 -1.0 28408451.5 62260646.0 108349164.25 217939421.0
end 170044.0 NaN NaN NaN 71536064.930683 51651978.295979 -1.0 28410685.0 62263789.5 108350005.25 217940337.0

Files

Filename Size md5
M1_Meadow.h5ad 1.32 GB 9b0d460aedc0528ef3fc0b586d08ac84
M1_Meadow_barcodes.tsv.gz 53.35 KB e7b437fe6d980dd1987368fa05dec58d
M1_Meadow_features.tsv.gz 3.12 MB 12ab73b31ee0a3c6d0599b80a8872318
M1_Meadow_matrix.mtx.gz 592.13 MB 997c0d359673c1a4549083dd0a1e2e28
genomic_resource.yaml 1.03 KB a89fb55bae8a638a3a0d111325eb4dd6
statistics/