Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_Peregrine_rep1content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 5y7m
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Peregrine
  • gene_models: reference/Marmoset/gene_models/calJac240_pri_NCBI_RefSeq
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sample_id: M1_Peregrine_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: marmoset
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 11698 × 139061 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_Peregrine_rep1/M1_Peregrine_rep1.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 139061 139061 ND1 1 NaN NaN NaN NaN NaN NaN NaN
feature_types 139061 2 Peaks 117015 NaN NaN NaN NaN NaN NaN NaN
chrom 139048 24 chr5 11167 NaN NaN NaN NaN NaN NaN NaN
start 139061.0 NaN NaN NaN 71591705.634995 51688061.076269 -1.0 28387415.0 62288214.0 108399184.0 217939423.0
end 139061.0 NaN NaN NaN 71594479.121414 51688039.477727 -1.0 28397294.0 62289718.0 108399822.0 217940341.0

Files

Filename Size md5
M1_Peregrine_rep1.h5ad 1.06 GB bcd589ae8417eca34a24ac3015f67baf
M1_Peregrine_rep1_barcodes.tsv.gz 56.44 KB 3c93d8d8b4c66b4668aef984fcfa2cba
M1_Peregrine_rep1_features.tsv.gz 2.55 MB 3563e39df3e621c1b4dfb8977d98c24f
M1_Peregrine_rep1_matrix.mtx.gz 475.39 MB a7e238e155c8c11547b1999bbb9b65be
genomic_resource.yaml 1.06 KB 1f3ea276f126e0685a65befd55cc7d26
statistics/