Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_Peregrine_rep2content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 5y7m
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Peregrine
  • gene_models: reference/Marmoset/gene_models/calJac240_pri_NCBI_RefSeq
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sample_id: M1_Peregrine_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: marmoset
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 10421 × 135880 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_Peregrine_rep2/M1_Peregrine_rep2.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 135880 135880 ND1 1 NaN NaN NaN NaN NaN NaN NaN
feature_types 135880 2 Peaks 113834 NaN NaN NaN NaN NaN NaN NaN
chrom 135867 24 chr5 10924 NaN NaN NaN NaN NaN NaN NaN
start 135880.0 NaN NaN NaN 71537217.237055 51604676.515708 -1.0 28427236.75 62316899.5 108298960.75 217939419.0
end 135880.0 NaN NaN NaN 71540036.255667 51604656.648899 -1.0 28431818.25 62318314.5 108300987.75 217940341.0

Files

Filename Size md5
M1_Peregrine_rep2.h5ad 976.76 MB e2a133e57c414da0c2904cff9383884e
M1_Peregrine_rep2_barcodes.tsv.gz 50.68 KB 166d3ffa4d6c57732695909e88e72f25
M1_Peregrine_rep2_features.tsv.gz 2.49 MB 64e92da41520df56620afcdfbcafdf62
M1_Peregrine_rep2_matrix.mtx.gz 425.28 MB cf93c2a7d86e9dd18d061e348b0c2ada
genomic_resource.yaml 1.06 KB e5e028aecd3ca6641ff2337b6fa99c93
statistics/