Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_R2content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 6 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: NA
  • gene_models: reference/Macaque/gene_models/Mmul_10_NCBI_RefSeq
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sample_id: M1_R2
  • sequencing_platform: Illumina
  • sex: M
  • species: macaque
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 10193 × 178392 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_R2/M1_R2.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 178392 178392 SHOX 1 NaN NaN NaN NaN NaN NaN NaN
feature_types 178392 2 Peaks 149632 NaN NaN NaN NaN NaN NaN NaN
chrom 178392 22 chr1 16618 NaN NaN NaN NaN NaN NaN NaN
start 178392.0 NaN NaN NaN 73891645.626631 52604493.19878 374.0 29419858.75 65662643.5 111465268.25 223614251.0
end 178392.0 NaN NaN NaN 73893860.826438 52604543.517143 375.0 29422941.0 65665450.0 111468774.25 223615294.0

Files

Filename Size md5
M1_R2.h5ad 622.24 MB 38db756cb568e31beaaf2adaf3f71f19
M1_R2_barcodes.tsv.gz 49.58 KB 61b10a0c398c4d9b1a680194bc4333d9
M1_R2_features.tsv.gz 3.26 MB a0135a98ad86cf7839ac481822f36bb5
M1_R2_matrix.mtx.gz 272.5 MB 14b1c588b59323ca6015f1d22f01c5ca
genomic_resource.yaml 1018.0 B fa1f8849f4fbe2a985881cb742f2170f
statistics/