Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_Webstercontent_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 4y0m
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Webster
  • gene_models: reference/Marmoset/gene_models/calJac240_pri_NCBI_RefSeq
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Marmoset/genome/calJac240_pri
  • resolution: single_nucleus
  • sample_id: M1_Webster
  • sequencing_platform: Illumina
  • sex: M
  • species: marmoset
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 10541 × 156857 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_Webster/M1_Webster.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 156857 156857 ND1 1 NaN NaN NaN NaN NaN NaN NaN
feature_types 156857 2 Peaks 134811 NaN NaN NaN NaN NaN NaN NaN
chrom 156844 24 chr1 12360 NaN NaN NaN NaN NaN NaN NaN
start 156857.0 NaN NaN NaN 71652350.740624 51769059.463465 -1.0 28361539.0 62454707.0 108512293.0 217939426.0
end 156857.0 NaN NaN NaN 71654900.016467 51769038.227385 -1.0 28364498.0 62456479.0 108514772.0 217940344.0

Files

Filename Size md5
M1_Webster.h5ad 1.15 GB d80768c0c3ad8343f9ea009b7fb6d635
M1_Webster_barcodes.tsv.gz 51.12 KB b9c3058364bfe75ed8743ccce81f8913
M1_Webster_features.tsv.gz 2.88 MB dd6cf457b32cd466cc15be2352c657a4
M1_Webster_matrix.mtx.gz 514.43 MB b4d372deb2d0125819afbd58ecf12b74
genomic_resource.yaml 1.03 KB 69b9741e092da0c4efbbfddb45f5856a
statistics/