Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_donor1content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 42 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: H19.30.001
  • gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor1
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 6995 × 147521 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_donor1/M1_donor1.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 147521 147511 ARMCX5-GPRASP2 2 NaN NaN NaN NaN NaN NaN NaN
feature_types 147521 2 Peaks 110920 NaN NaN NaN NaN NaN NaN NaN
chrom 147508 39 chr1 13742 NaN NaN NaN NaN NaN NaN NaN
start 147521.0 NaN NaN NaN 77077830.909118 56821357.13352 -1.0 31722478.0 65685636.0 114237100.0 248945599.0
end 147521.0 NaN NaN NaN 77081490.229167 56821409.42018 -1.0 31723384.0 65695674.0 114240044.0 248946368.0

Files

Filename Size md5
M1_donor1.h5ad 469.42 MB 981927fcf85ce82a88d921b498ec5c00
M1_donor1_barcodes.tsv.gz 34.95 KB 2c710aa6403ec89a0fa7bf7284733984
M1_donor1_features.tsv.gz 2.74 MB fd0e2e89253e10656c3d3c45b95c8a50
M1_donor1_matrix.mtx.gz 203.44 MB d4a87b8c0c4c035879539702f03000ad
genomic_resource.yaml 1.02 KB 79784a0161e84844b7303d7556067c97
statistics/