Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_donor1_neuncontent_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 42 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: H19.30.001
  • gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
  • modalities: RNA, ATAC
  • neun_enriched: yes
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor1_neun
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 15938 × 178212 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_donor1_neun/M1_donor1_neun.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 178212 178202 ARMCX5-GPRASP2 2 NaN NaN NaN NaN NaN NaN NaN
feature_types 178212 2 Peaks 141611 NaN NaN NaN NaN NaN NaN NaN
chrom 178199 39 chr1 16394 NaN NaN NaN NaN NaN NaN NaN
start 178212.0 NaN NaN NaN 77443786.524072 56828375.23208 -1.0 31729089.25 66637319.5 114598962.5 248945614.0
end 178212.0 NaN NaN NaN 77446958.303846 56828403.35572 -1.0 31730285.5 66641468.5 114608975.25 248946371.0

Files

Filename Size md5
M1_donor1_neun.h5ad 1.41 GB 778761c5d8210959a96a30bb035e6fab
M1_donor1_neun_barcodes.tsv.gz 75.15 KB 0f7bd6df541dce41b1a8dbc23ec7edfe
M1_donor1_neun_features.tsv.gz 3.3 MB 43213422fdee2aaa5535b601e859457d
M1_donor1_neun_matrix.mtx.gz 636.67 MB 0524b46afff4bdfa3a9059a221c32fdf
genomic_resource.yaml 1.03 KB 1d6b4d00d573e8806ac724e9282f6ee9
statistics/