Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_donor2content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 29 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: H19.30.002/UW7060
  • gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor2
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 10330 × 148798 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_donor2/M1_donor2.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 148798 148788 ARMCX5-GPRASP2 2 NaN NaN NaN NaN NaN NaN NaN
feature_types 148798 2 Peaks 112197 NaN NaN NaN NaN NaN NaN NaN
chrom 148785 39 chr1 13967 NaN NaN NaN NaN NaN NaN NaN
start 148798.0 NaN NaN NaN 76857805.589101 56659048.281476 -1.0 31686824.0 65286481.5 113895711.25 248945623.0
end 148798.0 NaN NaN NaN 76861442.305434 56659110.544071 -1.0 31688433.5 65288320.0 113897328.5 248946467.0

Files

Filename Size md5
M1_donor2.h5ad 694.3 MB 72ff7d3e986ce32d1083a034b6f90c6b
M1_donor2_barcodes.tsv.gz 50.47 KB 2bf4c19c8f025da18f9e86d2e877817a
M1_donor2_features.tsv.gz 2.76 MB d376b58897d37b73926fa87011da496c
M1_donor2_matrix.mtx.gz 305.31 MB 43fff4601d786405ec030e49ddfbab70
genomic_resource.yaml 1.02 KB 15c31b214f51c37c33c715b6b0abb90d
statistics/