Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_donor2_neuncontent_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 29 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: H19.30.002/UW7060
  • gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
  • modalities: RNA, ATAC
  • neun_enriched: yes
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor2_neun
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 11659 × 163366 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_donor2_neun/M1_donor2_neun.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 163366 163356 ARMCX5-GPRASP2 2 NaN NaN NaN NaN NaN NaN NaN
feature_types 163366 2 Peaks 126765 NaN NaN NaN NaN NaN NaN NaN
chrom 163353 39 chr1 14934 NaN NaN NaN NaN NaN NaN NaN
start 163366.0 NaN NaN NaN 77551559.191778 56637951.614311 -1.0 32018697.25 66701225.0 114349345.25 248945613.0
end 163366.0 NaN NaN NaN 77554942.093018 56637977.298909 -1.0 32022231.75 66702941.0 114356451.75 248946457.0

Files

Filename Size md5
M1_donor2_neun.h5ad 1.25 GB 4a4e9458bc80fbf44d33d581daf9bc3e
M1_donor2_neun_barcodes.tsv.gz 56.33 KB ea53220cf0590e41b62da64be8518616
M1_donor2_neun_features.tsv.gz 3.03 MB fdeb8360dea32449d4eec7f89aa106a2
M1_donor2_neun_matrix.mtx.gz 557.74 MB f2d577f0e0d3338849b79764e14e80e3
genomic_resource.yaml 1.04 KB 34d82604e00866747893a4e548328e7c
statistics/