Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_donor3content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 58 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: H19.30.004
  • gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor3
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 10540 × 179769 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_donor3/M1_donor3.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 179769 179759 ARMCX5-GPRASP2 2 NaN NaN NaN NaN NaN NaN NaN
feature_types 179769 2 Peaks 143168 NaN NaN NaN NaN NaN NaN NaN
chrom 179756 39 chr1 16331 NaN NaN NaN NaN NaN NaN NaN
start 179769.0 NaN NaN NaN 77139813.932074 56691866.0477 -1.0 31872548.0 65971220.0 114329868.0 248945633.0
end 179769.0 NaN NaN NaN 77142971.589462 56691906.274701 -1.0 31873926.0 65981309.0 114334537.0 248946432.0

Files

Filename Size md5
M1_donor3.h5ad 922.38 MB 3fdfdb97058d2c13f8d879446c7530f5
M1_donor3_barcodes.tsv.gz 51.25 KB 3a994177c5e0605e7187cb6c4bc9678a
M1_donor3_features.tsv.gz 3.33 MB 7719f46b124c628544435a42e4f4beef
M1_donor3_matrix.mtx.gz 410.39 MB 6586d691e4b53c4661edf57f256458d4
genomic_resource.yaml 1.02 KB 54b4c0d0412f6731ce88cf32bd47d596
statistics/