Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_donor3_neuncontent_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 58 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: H19.30.004
  • gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
  • modalities: RNA, ATAC
  • neun_enriched: yes
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor3_neun
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 2359 × 106445 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_donor3_neun/M1_donor3_neun.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 106445 106435 ARMCX5-GPRASP2 2 NaN NaN NaN NaN NaN NaN NaN
feature_types 106445 2 Peaks 69844 NaN NaN NaN NaN NaN NaN NaN
chrom 106432 39 chr1 10000 NaN NaN NaN NaN NaN NaN NaN
start 106445.0 NaN NaN NaN 76078157.429771 56970361.482567 -1.0 30923384.0 63691638.0 113149250.0 248926758.0
end 106445.0 NaN NaN NaN 76082899.547043 56970501.692682 -1.0 30926958.0 63696652.0 113151007.0 248927599.0

Files

Filename Size md5
M1_donor3_neun.h5ad 188.98 MB aeba81217a68ef6b4d77b05125c81dbf
M1_donor3_neun_barcodes.tsv.gz 12.71 KB 1c5de1bf18938998d50d10d4ef0a021d
M1_donor3_neun_features.tsv.gz 1.98 MB cea8c40e51263607b9a7c30358ef65c2
M1_donor3_neun_matrix.mtx.gz 78.82 MB 3a5cf5e11847d8e3b580ac7f3d39aa80
genomic_resource.yaml 1.03 KB c5ef1e299fa8f9ddf2f64492ab8a4378
statistics/