Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_donor3_rep2content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 58 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: H19.30.004
  • gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sample_id: M1_donor3_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: human
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 2257 × 117725 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_donor3_rep2/M1_donor3_rep2.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 117725 117715 ARMCX5-GPRASP2 2 NaN NaN NaN NaN NaN NaN NaN
feature_types 117725 2 Peaks 81124 NaN NaN NaN NaN NaN NaN NaN
chrom 117712 39 chr1 11112 NaN NaN NaN NaN NaN NaN NaN
start 117725.0 NaN NaN NaN 76607516.613523 56455128.805803 -1.0 31836463.0 64888023.0 113468900.0 248945638.0
end 117725.0 NaN NaN NaN 76611891.322319 56455224.033387 -1.0 31840709.0 64889530.0 113474986.0 248946515.0

Files

Filename Size md5
M1_donor3_rep2.h5ad 168.76 MB 1226bfb22112dd46267cd278c7202ee4
M1_donor3_rep2_barcodes.tsv.gz 12.2 KB a5139ce7db94d7c4681ebb692ee55841
M1_donor3_rep2_features.tsv.gz 2.19 MB ea531dcc1218947a6a526248c7946185
M1_donor3_rep2_matrix.mtx.gz 70.03 MB a4ad529320004e3f7b929d26e36a42b3
genomic_resource.yaml 1.03 KB 695106fdf319fc9808ce4c7c6d7c007d
statistics/