Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/M1_mac3content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: 14 y
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: 70313
  • gene_models: reference/Macaque/gene_models/Mmul_10_NCBI_RefSeq
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Macaque/genome/Mmul_10
  • resolution: single_nucleus
  • sample_id: M1_Mac3
  • sequencing_platform: Illumina
  • sex: M
  • species: macaque
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 11524 × 185290 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/M1_mac3/M1_mac3.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 185290 185290 SHOX 1 NaN NaN NaN NaN NaN NaN NaN
feature_types 185290 2 Peaks 156530 NaN NaN NaN NaN NaN NaN NaN
chrom 185290 22 chr1 17319 NaN NaN NaN NaN NaN NaN NaN
start 185290.0 NaN NaN NaN 73757956.88504 52981967.109026 374.0 28814095.25 65412467.0 111804907.0 223609305.0
end 185290.0 NaN NaN NaN 73760109.327438 52982018.21254 375.0 28816511.5 65416352.5 111806324.0 223609306.0

Files

Filename Size md5
M1_mac3.h5ad 1.35 GB 1f14348c59130d4897f9c6251b887b29
M1_mac3_barcodes.tsv.gz 55.68 KB 8838520e295c995d0a98bb0ebed05eb2
M1_mac3_features.tsv.gz 3.38 MB 89f44956af7595f5d987cbff7fedaf71
M1_mac3_matrix.mtx.gz 615.59 MB 4b3688a760eb930a5dcb79d6f0eba134
genomic_resource.yaml 1.01 KB 4fd382e4b259b53d217b04b269f6e8e6
statistics/