Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_2C_rep1content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Mop_2C
  • gene_models: reference/Mouse/gene_models/GRCm39_basic
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_2C_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 4593 × 231368 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/Mop_2C_rep1/Mop_2C_rep1.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 231368 231328 Ccl27a 3 NaN NaN NaN NaN NaN NaN NaN
feature_types 231368 2 Peaks 199083 NaN NaN NaN NaN NaN NaN NaN
chrom 231355 40 chr2 17771 NaN NaN NaN NaN NaN NaN NaN
start 231368.0 NaN NaN NaN 74559424.803875 43710331.420211 -1.0 37557221.75 71739254.0 106727031.5 195241244.0
end 231368.0 NaN NaN NaN 74561010.495501 43710271.878601 -1.0 37559854.75 71740127.0 106727932.5 195242152.0

Files

Filename Size md5
Mop_2C_rep1.h5ad 738.55 MB 0b821d61193cfa0fcccd326b4bbb9e82
Mop_2C_rep1_barcodes.tsv.gz 23.64 KB 19cb80243362ade5b6a6eae1b85a639e
Mop_2C_rep1_features.tsv.gz 4.26 MB b3ac1f3ad352261f0a71a05ce96688da
Mop_2C_rep1_matrix.mtx.gz 317.54 MB dc709965d1291479edd8c07be93be3d2
genomic_resource.yaml 1.01 KB 92542bd2e47c602228407c7d4bd6f531
statistics/