Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_2C_rep2content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Mop_2C
  • gene_models: reference/Mouse/gene_models/GENCODE/M22/basic/CHR
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm38
  • resolution: single_nucleus
  • sample_id: Mop_2C_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 9614 × 236718 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/Mop_2C_rep2/Mop_2C_rep2.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 236718 236678 Ccl27a 3 NaN NaN NaN NaN NaN NaN NaN
feature_types 236718 2 Peaks 204433 NaN NaN NaN NaN NaN NaN NaN
chrom 236705 40 chr2 18262 NaN NaN NaN NaN NaN NaN NaN
start 236718.0 NaN NaN NaN 74912463.393384 43746063.942928 -1.0 37758001.5 72176254.0 107274323.25 195241244.0
end 236718.0 NaN NaN NaN 74914028.930048 43745999.844988 -1.0 37761134.5 72177042.0 107276640.25 195242151.0

Files

Filename Size md5
Mop_2C_rep2.h5ad 1.19 GB f37e372d6cf1db3025c750af2c17eb6f
Mop_2C_rep2_barcodes.tsv.gz 47.08 KB 4e168b5243f465e7e429b11b3fcf8220
Mop_2C_rep2_features.tsv.gz 4.35 MB d80810f460560166e1caf78e40985d54
Mop_2C_rep2_matrix.mtx.gz 534.08 MB e431d14b3f32398e082af3ffefabcf23
genomic_resource.yaml 1.01 KB d6b2c7871dba768dece76d6e812e0628
statistics/