Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_3C_rep1content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Mop_3C
  • gene_models: reference/Mouse/gene_models/GRCm39_basic
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_3C_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 5643 × 221752 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/Mop_3C_rep1/Mop_3C_rep1.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 221752 221712 Ccl27a 3 NaN NaN NaN NaN NaN NaN NaN
feature_types 221752 2 Peaks 189467 NaN NaN NaN NaN NaN NaN NaN
chrom 221739 40 chr2 17267 NaN NaN NaN NaN NaN NaN NaN
start 221752.0 NaN NaN NaN 74766590.998129 43829242.392728 -1.0 37430136.75 72027349.5 107093120.75 195241243.0
end 221752.0 NaN NaN NaN 74768202.267051 43829177.164661 -1.0 37431316.5 72029720.0 107094187.75 195242152.0

Files

Filename Size md5
Mop_3C_rep1.h5ad 853.77 MB 59283015309888442c26b09580dcca16
Mop_3C_rep1_barcodes.tsv.gz 28.71 KB 97aed8c6578a37112cb4c40f2f4e39d0
Mop_3C_rep1_features.tsv.gz 4.08 MB 57e6c7d30b0645c2949f272c06fc0be3
Mop_3C_rep1_matrix.mtx.gz 365.03 MB 97c9a5393b60f881e4a7ca818c9fff15
genomic_resource.yaml 1.01 KB 74f639cbacffd4bbaf886567014289aa
statistics/