Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_3C_rep2content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Mop_3C
  • gene_models: reference/Mouse/gene_models/GRCm39_basic
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_3C_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 8583 × 229213 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/Mop_3C_rep2/Mop_3C_rep2.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 229213 229173 Ccl27a 3 NaN NaN NaN NaN NaN NaN NaN
feature_types 229213 2 Peaks 196928 NaN NaN NaN NaN NaN NaN NaN
chrom 229200 40 chr2 17583 NaN NaN NaN NaN NaN NaN NaN
start 229213.0 NaN NaN NaN 74606441.668754 43786084.15546 -1.0 37428676.0 71738186.0 106868914.0 195241243.0
end 229213.0 NaN NaN NaN 74608030.30452 43786023.629959 -1.0 37429565.0 71738986.0 106870004.0 195242152.0

Files

Filename Size md5
Mop_3C_rep2.h5ad 1.3 GB 2313c7fb574d83111e6862b292b8515e
Mop_3C_rep2_barcodes.tsv.gz 42.37 KB 9c566cff8741b555e12ba81cf4bfb2c6
Mop_3C_rep2_features.tsv.gz 4.22 MB 1b41740aea7886cc21e63a64f4563ca3
Mop_3C_rep2_matrix.mtx.gz 583.8 MB 058d447ff678f3f93f5174aa0955b596
genomic_resource.yaml 1.01 KB 01294b37907ebcea7508fc81f3a1da3f
statistics/