Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_4B_rep1content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Mop_4B
  • gene_models: reference/Mouse/gene_models/GRCm39_basic
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_4B_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 2963 × 213045 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/Mop_4B_rep1/Mop_4B_rep1.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 213045 213005 Ccl27a 3 NaN NaN NaN NaN NaN NaN NaN
feature_types 213045 2 Peaks 180760 NaN NaN NaN NaN NaN NaN NaN
chrom 213032 40 chr2 16430 NaN NaN NaN NaN NaN NaN NaN
start 213045.0 NaN NaN NaN 74740405.148879 43817885.728785 -1.0 37419226.0 71991454.0 107065643.0 195241245.0
end 213045.0 NaN NaN NaN 74742050.086672 43817818.166703 -1.0 37420210.0 71994569.0 107065644.0 195242153.0

Files

Filename Size md5
Mop_4B_rep1.h5ad 490.84 MB a1dc1ba90ff20f66f01a9267ca00ffe9
Mop_4B_rep1_barcodes.tsv.gz 15.71 KB e5fdc9a382aad87c84b5563464600762
Mop_4B_rep1_features.tsv.gz 3.92 MB ccfd32db16219a29ec0a780a558d822d
Mop_4B_rep1_matrix.mtx.gz 204.29 MB e0511cee9c4976d43aca1cc25e3be2c6
genomic_resource.yaml 1.01 KB 670d101db302c58f1051b7b61bbf596a
statistics/