Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_4B_rep2content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Mop_4B
  • gene_models: reference/Mouse/gene_models/GRCm39_basic
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_4B_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 11043 × 210491 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/Mop_4B_rep2/Mop_4B_rep2.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 210491 210451 Ccl27a 3 NaN NaN NaN NaN NaN NaN NaN
feature_types 210491 2 Peaks 178206 NaN NaN NaN NaN NaN NaN NaN
chrom 210478 40 chr2 16282 NaN NaN NaN NaN NaN NaN NaN
start 210491.0 NaN NaN NaN 75046138.610268 43857678.183705 -1.0 37638813.5 72410090.0 107556525.5 195241242.0
end 210491.0 NaN NaN NaN 75047793.239331 43857604.136909 -1.0 37639931.0 72410902.0 107557428.5 195242150.0

Files

Filename Size md5
Mop_4B_rep2.h5ad 1.43 GB 1ab8581b3cd3240758a56e40dff434fe
Mop_4B_rep2_barcodes.tsv.gz 53.5 KB 8597de799b5f10e44a07253bc343d1b6
Mop_4B_rep2_features.tsv.gz 3.87 MB 995fcff892d65631486186c4d9d80f3a
Mop_4B_rep2_matrix.mtx.gz 645.03 MB 3e5c256e5fa7c21fe6ba8c23c4d7424f
genomic_resource.yaml 1.01 KB 960b6a079f1e054bee7135db3bc2b75a
statistics/