Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_5D_rep1content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Mop_5D
  • gene_models: reference/Mouse/gene_models/GRCm39_basic
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_5D_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 16324 × 232594 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/Mop_5D_rep1/Mop_5D_rep1.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 232594 232554 Ccl27a 3 NaN NaN NaN NaN NaN NaN NaN
feature_types 232594 2 Peaks 200309 NaN NaN NaN NaN NaN NaN NaN
chrom 232581 40 chr2 17813 NaN NaN NaN NaN NaN NaN NaN
start 232594.0 NaN NaN NaN 74783196.664402 43835264.100464 -1.0 37508137.5 72026347.0 107090625.5 195241244.0
end 232594.0 NaN NaN NaN 74784774.018049 43835201.313447 -1.0 37509654.75 72028880.0 107090827.25 195242153.0

Files

Filename Size md5
Mop_5D_rep1.h5ad 2.63 GB c8ee5806a6b220c5832c49df539ded93
Mop_5D_rep1_barcodes.tsv.gz 76.82 KB c12186b6c86d0b3364d1c2eb9ce6e03c
Mop_5D_rep1_features.tsv.gz 4.28 MB 9ab9e9962318ad808525b17f3da1b804
Mop_5D_rep1_matrix.mtx.gz 1.17 GB a78bcd7471b7dcd9018f776c9f1d5b49
genomic_resource.yaml 1.01 KB 862964031eed6b5eed0c41549a653b5a
statistics/