Resource

Id summary/zemke2023Conserved/rna_expression_atac_matrix/Mop_5D_rep2content_copy
Type ann_data
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • data_types: gene_expression, peak_counts
  • dataset: zemke2023Conserved
  • donor_id: Mop_5D
  • gene_models: reference/Mouse/gene_models/GRCm39_basic
  • modalities: RNA, ATAC
  • neun_enriched: no
  • processing_level: RPKM_normalized
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_5D_rep2
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 7010 × 218914 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_sample/Mop_5D_rep2/Mop_5D_rep2.h5ad'
    var: 'gene_symbols', 'feature_types', 'chrom', 'start', 'end'
    layers: None (.X)

var description

Columns count unique top freq mean std min 25% 50% 75% max
gene_symbols 218914 218874 Ccl27a 3 NaN NaN NaN NaN NaN NaN NaN
feature_types 218914 2 Peaks 186629 NaN NaN NaN NaN NaN NaN NaN
chrom 218901 40 chr2 16814 NaN NaN NaN NaN NaN NaN NaN
start 218914.0 NaN NaN NaN 74837362.982856 43818428.008534 -1.0 37550486.0 72159848.0 107205417.25 195241243.0
end 218914.0 NaN NaN NaN 74838989.277794 43818360.429577 -1.0 37551718.25 72160344.0 107206315.25 195242151.0

Files

Filename Size md5
Mop_5D_rep2.h5ad 867.03 MB 5043744fb3a332ea720f8517d879bf52
Mop_5D_rep2_barcodes.tsv.gz 35.01 KB 1496137829730e451afde7f6351ff144
Mop_5D_rep2_features.tsv.gz 4.03 MB 020ac704eb71423ae191170fe2eb3b05
Mop_5D_rep2_matrix.mtx.gz 378.09 MB 023c09371c172aa6761aac7ecfb4135c
genomic_resource.yaml 1.01 KB b09d5103aede73f00adf092f60b1b5fb
statistics/