Resource

Id summary/zemke2023Conserved/rna_expression_matrix/humancontent_copy
Type ann_data
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • data_types: gene_expression
  • dataset: zemke2023Conserved
  • gene_models: reference/Human/gene_models/GENCODE/49/basic/ALL
  • modalities: RNA
  • processing_level: RPKM_normalized
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • technology: 10x genomics
  • vendor: 10x_Genomics

AnnData description 


AnnData object with n_obs × n_vars = 40937 × 36601 backed at '/gpfs/commons/groups/iossifov_lab/SC_Summaries_GRR/summary/zemke2023Conserved/cell_expression/by_species/human/GSE229169_human_filtered.h5ad'
    obs: 'orig.ident', 'subclass'
    layers: None (.X)

obs description

Columns count unique top freq
orig.ident 40937 7 M1_donor1_neun 10795
subclass 40937 20 ODC 14688

Files

Filename Size md5
GSE229169_human_filtered.h5ad 1.35 GB cc65ca7bc771544ca1e6567fa3b416df
GSE229169_human_filtered_barcodes.tsv.gz 184.66 KB 6155736f0eb9447ebdd860bb81c8c5f6
GSE229169_human_filtered_features.tsv.gz 127.53 KB a6a5c527ff1bd25e1bab7314c7d8c4a8
GSE229169_human_filtered_matrix.mtx.gz 356.91 MB 987c70aba24c3ab83b6dae1b9d0d2474
GSE229169_human_filtered_metadata.tsv.gz 240.07 KB 881f20e1bfe17a986129c16a57a9191e
genomic_resource.yaml 893.0 B cbfd6349b11abf2e37d5b895e4380608
statistics/