Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc11content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc11
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549647
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TACTTCGTCTGGCATG-1, TCCGGTAAGTTTGCGG-1, TTGACGTAGAACCTGT-1, ACTCGCTTCGGGATTT-1, TAGTTTGAGAGAAGGG-1 (top 5 of 504466 values)
count int

count
HISTOGRAM FOR count [1, 10]

Fragments

not computed

Files

Filename Size md5
GSM8549647_hc11_atac_fragments.tsv.gz 1.1 GB d9e3ed7c857612d976362e7cd03b91b4
GSM8549647_hc11_atac_fragments.tsv.gz.tbi 835.05 KB 85675d9fccf1bdcc0834288dd3749a12
GSM8549647_hc11_atac_fragments.tsv.gz.tbi.gz 837.01 KB d99c23561da25fa66e0ab0227ffe841a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB d80e328826e812ca36022a77e5a5b7d8
statistics/