Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc1134content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc1134
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549625
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGCCATTGTCCCGGAA-1, CTTCAATTCTCTAGCC-1, TCGCATTGTCATGCAA-1, AAATGCCTCTTAATGG-1, CATAGACTCCTAAATG-1 (top 5 of 658473 values)
count int

count
HISTOGRAM FOR count [1, 24]

Fragments

not computed

Files

Filename Size md5
GSM8549625_hc1134_atac_fragments.tsv.gz 1.29 GB 627ecc9e00acfb68d7add8949ddccf28
GSM8549625_hc1134_atac_fragments.tsv.gz.tbi 854.75 KB 7d742806241f9d6885f817f2c26c7389
GSM8549625_hc1134_atac_fragments.tsv.gz.tbi.gz 854.0 KB 2ef785d72b3365ab15c6cbf08939d4e1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 7d5ffb948e4fd6186c1a5cc2ebf6fb81
statistics/