Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc1153content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc1153
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549641
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTAAAGCTCAAGCCTG-1, TTTCTCACACAGGAAT-1, GGTTCCCGTAACCTAG-1, TACTGGCCATGGAGGC-1, TCAGTGAGTGAATCGC-1 (top 5 of 420230 values)
count int

count
HISTOGRAM FOR count [1, 21]

Fragments

not computed

Files

Filename Size md5
GSM8549641_hc1153_atac_fragments.tsv.gz 945.22 MB 1dbdf163b5cf4822b1fd317ddd7c83e3
GSM8549641_hc1153_atac_fragments.tsv.gz.tbi 746.36 KB 172273ca2d07caf1ce072fdc24b90d5e
GSM8549641_hc1153_atac_fragments.tsv.gz.tbi.gz 745.21 KB 3d8330baabaa1b1eb228fdafb95c43bf
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 2781c26bd3770292e0195860f1274fc4
statistics/