Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc12content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc12
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549646
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCCCAAATCATCCTGC-1, GATGCTTAGTCATTTC-1, ACGCTTGAGGAGGGTT-1, CATGCATAGCCTGACA-1, GCACATTAGGTCAAAG-1 (top 5 of 492882 values)
count int

count
HISTOGRAM FOR count [1, 27]

Fragments

not computed

Files

Filename Size md5
GSM8549646_hc12_atac_fragments.tsv.gz 1.53 GB 461a689c3a7179145fe7d508b4db1369
GSM8549646_hc12_atac_fragments.tsv.gz.tbi 938.53 KB 0ede5a83baf0deb7a23baca808bdd16f
GSM8549646_hc12_atac_fragments.tsv.gz.tbi.gz 937.93 KB 553f2c23bfc950cf77a1810f5cbc39b3
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 9dbc4df4474f0a9492e53ad3af898fbd
statistics/