Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc1203content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc1203
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549642
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GAGTATCTCTTGACCC-1, ACTTATCTCTTGTTCG-1, ATTATCCTCCCGCCTA-1, CAAACTGGTGTTTGAG-1, TATGGCCCACCCTCAC-1 (top 5 of 631043 values)
count int

count
HISTOGRAM FOR count [1, 27]

Fragments

not computed

Files

Filename Size md5
GSM8549642_hc1203_atac_fragments.tsv.gz 1.76 GB 07bb5d86b7109de99328d53ede304bfb
GSM8549642_hc1203_atac_fragments.tsv.gz.tbi 980.28 KB 0b825a79ad3170ac32fa53b1bfc5dc7d
GSM8549642_hc1203_atac_fragments.tsv.gz.tbi.gz 980.12 KB b6d6f400d40390cd9303a403c15b17af
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 6514f3e6456d4d7699729925cbea1009
statistics/