Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc1216content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc1216
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549644
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCTAATAAGCAAACCT-1, TGGATTGGTGAATCGC-1, ATCCATAAGGCGGGTA-1, CCAGCCTGTCAGGCAT-1, GCGCCTTGTTAATGCG-1 (top 5 of 599705 values)
count int

count
HISTOGRAM FOR count [1, 93]

Fragments

not computed

Files

Filename Size md5
GSM8549644_hc1216_atac_fragments.tsv.gz 1.4 GB 1c262368ea66c64e534bbcde50f6d668
GSM8549644_hc1216_atac_fragments.tsv.gz.tbi 885.1 KB 911489c70e09cc873f468c3552bc8e1a
GSM8549644_hc1216_atac_fragments.tsv.gz.tbi.gz 885.25 KB 106e167a0456a1551e15362e2d2c83ab
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB e6aa69460d76eba45ff7ad5cb05e8dff
statistics/