Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc1265content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc1265
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549638
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AATACCGGTTCAAGCA-1, GTTTGTAAGCATGTCG-1, ATCAGGTTCGATTTGA-1, TACTGGCCAGAGAGCC-1, CTTTGTCCAGTTAGCC-1 (top 5 of 592649 values)
count int

count
HISTOGRAM FOR count [1, 15]

Fragments

not computed

Files

Filename Size md5
GSM8549638_hc1265_atac_fragments.tsv.gz 2.95 GB 4a07bfdfcf959e0bf53cee1f72068df4
GSM8549638_hc1265_atac_fragments.tsv.gz.tbi 1.24 MB 92da837919e83861ae58f917b4e4bf70
GSM8549638_hc1265_atac_fragments.tsv.gz.tbi.gz 1.24 MB a5342fbfa15cb7af82c1fb160c0c8f78
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB b2b87269ffb6d06d02d3c12dbfbc808f
statistics/