Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc1271content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc1271
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549640
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAAACAACATAAAGCA-1, GCTCTGGCATTATGGT-1, GGTTAATGTGATTTGG-1, GGCTATTAGCAGCTCA-1, TAAGGCTTCCTTGAGG-1 (top 5 of 614085 values)
count int

count
HISTOGRAM FOR count [1, 27]

Fragments

not computed

Files

Filename Size md5
GSM8549640_hc1271_atac_fragments.tsv.gz 3.03 GB 3d49278a97b35bc099cfbe5c38817207
GSM8549640_hc1271_atac_fragments.tsv.gz.tbi 1.25 MB d7e95062174d5a2b231886f460af8d4c
GSM8549640_hc1271_atac_fragments.tsv.gz.tbi.gz 1.24 MB 316faa0d4969f512453fd391619eb8f1
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 366a6c4652751182b610d6cd8c1398f1
statistics/