Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc13344content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc13344
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549622
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGACCTCAGGTCGATT-1, CATTGTGCAACCTAAT-1, GAGTGAGGTGTTTGTC-1, GATTACTCAAGCTACC-1, ACTTATGAGTAGCGCC-1 (top 5 of 561910 values)
count int

count
HISTOGRAM FOR count [1, 24]

Fragments

not computed

Files

Filename Size md5
GSM8549622_hc13344_atac_fragments.tsv.gz 1.63 GB 77b4fd8cd79efda3f4e1b21c4c12040a
GSM8549622_hc13344_atac_fragments.tsv.gz.tbi 953.24 KB a0858f8ae409edaacee0e28ad06ad94b
GSM8549622_hc13344_atac_fragments.tsv.gz.tbi.gz 954.85 KB 715b261e0df854157cd9fbf7d019ba8d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 9aaa4de85b39e1e92d3ef209adc969a1
statistics/