Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc13394content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc13394
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549635
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCTTCGTAGCACAGGG-1, GTTACCTGTTGGTTCT-1, GTGAATCTCCTAACGG-1, ATTGCAGGTTGTTGGA-1, GGAACGGTCACCAATA-1 (top 5 of 676252 values)
count int

count
HISTOGRAM FOR count [1, 22]

Fragments

not computed

Files

Filename Size md5
GSM8549635_hc13394_atac_fragments.tsv.gz 3.23 GB d6f72f80893c82efcd6e47f0b32b79e7
GSM8549635_hc13394_atac_fragments.tsv.gz.tbi 1.35 MB 2293950d3c563139b36739bf99940110
GSM8549635_hc13394_atac_fragments.tsv.gz.tbi.gz 1.35 MB 31cfa4d5448174aae0407564c86f4c67
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB ccf68673c553014df99cffe48149751e
statistics/