Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc13414content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc13414
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549626
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CTTGCTCAGGCTGGCT-1, GATGACTTCTCCTCTT-1, GCAGCTATCTTAGGGT-1, AGGGCTACAGCAGGTA-1, AGTAGGATCGTTATCT-1 (top 5 of 660221 values)
count int

count
HISTOGRAM FOR count [1, 20]

Fragments

not computed

Files

Filename Size md5
GSM8549626_hc13414_atac_fragments.tsv.gz 3.16 GB a2d0531803ff4411a6d2bf24a8f85d46
GSM8549626_hc13414_atac_fragments.tsv.gz.tbi 1.33 MB 245843d0867b748424a71416e158a54b
GSM8549626_hc13414_atac_fragments.tsv.gz.tbi.gz 1.33 MB 84640c2ddd1b2e35ed87c778b0bb42b6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 82493d3c99229b2934b637ceed73b025
statistics/