Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc1745content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc1745
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549629
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGTATCCGTAATCGGC-1, CACAGGGAGGACCGCT-1, AGTAACGAGGAAGCTA-1, GGTACAAAGGCACAGG-1, TGCATGAGTAGGTTGC-1 (top 5 of 650590 values)
count int

count
HISTOGRAM FOR count [1, 20]

Fragments

not computed

Files

Filename Size md5
GSM8549629_hc1745_atac_fragments.tsv.gz 2.46 GB 0d6af047148ed92454c2c818882bbd22
GSM8549629_hc1745_atac_fragments.tsv.gz.tbi 1.17 MB fce2e57f40fae669833f2c446f3222ab
GSM8549629_hc1745_atac_fragments.tsv.gz.tbi.gz 1.17 MB 5298aa11c6a7123424413612eb01202d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 7d2883c3161777d8d58afb6f4fa09b41
statistics/