Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc19content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc19
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549649
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AAGCCTCCAGAGGCTA-1, GGCGGTTTCGTTAGTA-1, AGAGATTAGTAGCGGG-1, CGGACCTAGGCGTAAA-1, CGCAATGTCAACCAAC-1 (top 5 of 565419 values)
count int

count
HISTOGRAM FOR count [1, 27]

Fragments

not computed

Files

Filename Size md5
GSM8549649_hc19_atac_fragments.tsv.gz 1.86 GB 1c64bf38208f29f27eddf7cc60d7d760
GSM8549649_hc19_atac_fragments.tsv.gz.tbi 1.08 MB a2da3492e9bb86acc909ae3f5d578e56
GSM8549649_hc19_atac_fragments.tsv.gz.tbi.gz 1.08 MB f25ffbfd902a5e2521a4bb179eb0cefe
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 491e894199677b68661a205294db851a
statistics/