Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc212191content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc212191
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549652
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTATGTTCATAATTGC-1, CGCATATAGCACTAGT-1, GAGGTTAAGCCTGAGC-1, TTTACGCGTGATTACG-1, TTCATTCAGCGAGGTG-1 (top 5 of 498690 values)
count int

count
HISTOGRAM FOR count [1, 21]

Fragments

not computed

Files

Filename Size md5
GSM8549652_hc212191_atac_fragments.tsv.gz 1.55 GB a41ec91c4cf8612c9049db4d362273b1
GSM8549652_hc212191_atac_fragments.tsv.gz.tbi 940.13 KB 22b06d30383f2fdabfffbd5b9882856c
GSM8549652_hc212191_atac_fragments.tsv.gz.tbi.gz 939.9 KB fb2170bcf4e80ba28fae321b271ccccf
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.34 KB 9f578cd37d5ac5d30a3c5805dcba0155
statistics/