Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc26content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc26
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549650
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CAGATTCAGTCATGCG-1, AGGCTAAAGACACTTA-1, TGGATTCAGCATTTCT-1, CCAACCAAGCGGATAA-1, ACCTGGTCAATTTAGC-1 (top 5 of 543896 values)
count int

count
HISTOGRAM FOR count [1, 36]

Fragments

not computed

Files

Filename Size md5
GSM8549650_hc26_atac_fragments.tsv.gz 2.0 GB 54b303c0150d37ad46b7373a49cf99e5
GSM8549650_hc26_atac_fragments.tsv.gz.tbi 1.02 MB aa92d6ed622fba7097b73f89f645c349
GSM8549650_hc26_atac_fragments.tsv.gz.tbi.gz 1.01 MB 64cd2a55b14c1a6586e1d1975fd231c6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 658ebb43f9d281f6a49ae4710c7f03a3
statistics/